摘要翻译:
Chem2Bio2RDF门户是一个系统化学生物学的链接开放数据(LOD)门户,旨在促进药物发现。它将大约25个关于基因、化合物、药物、途径、副作用、疾病和MEDLINE/PubMed文档的不同数据集转换为RDF三元组,并将它们链接到其他LOD泡泡,如Bio2RDF、LODD和DBPEDIA。该门户基于D2R服务器,并提供了一个SPARQL端点,但添加了一些独特的特性,如RDF分面浏览器、用户友好的SPARQL查询生成器、MEDLINE/PUBMed交叉验证服务和Cytoscape可视化插件。三个用例演示了这个门户的功能和可用性。
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英文标题:
《Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology》
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作者:
Bin Chen (1), David J Wild (1), Qian Zhu (1), Ying Ding (2), Xiao Dong
(1), Madhuvanthi Sankaranarayanan (1), Huijun Wang (1), Yuyin Sun (2) ((1)
School of Informatics and Computing, Indiana University, Bloomington, IN,
USA, (2) School of Library and Information Science, Indiana University,
Bloomington, IN, USA)
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最新提交年份:
2010
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分类信息:
一级分类:Computer Science 计算机科学
二级分类:Information Retrieval 信息检索
分类描述:Covers indexing, dictionaries, retrieval, content and analysis. Roughly includes material in ACM Subject Classes H.3.0, H.3.1, H.3.2, H.3.3, and H.3.4.
涵盖索引,字典,检索,内容和分析。大致包括ACM主题课程H.3.0、H.3.1、H.3.2、H.3.3和H.3.4中的材料。
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一级分类:Quantitative Biology 数量生物学
二级分类:Other Quantitative Biology 其他定量生物学
分类描述:Work in quantitative biology that does not fit into the other q-bio classifications
不适合其他q-bio分类的定量生物学工作
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英文摘要:
The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed documents into RDF triples and links them to other LOD bubbles, such as Bio2RDF, LODD and DBPedia. The portal is based on D2R server and provides a SPARQL endpoint, but adds on few unique features like RDF faceted browser, user-friendly SPARQL query generator, MEDLINE/PubMed cross validation service, and Cytoscape visualization plugin. Three use cases demonstrate the functionality and usability of this portal.
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PDF链接:
https://arxiv.org/pdf/1012.4759


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