R Package for WinBUGS

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datalist: An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables

datalist is an R package to 1) convert data sets into numeric data lists for import into JAGS, WinBUGS and OpenBUGS and 2) generate data.frames that can be passed to models for the purposes of predicting the effects of particular variables with the other variables held constant.

Version:	0.2
Depends:	R (≥ 3.0.2)
Imports:	assertthat
Suggests:	testthat
Published:	2014-01-03
Author:	Joe Thorley [aut, cre]
Maintainer:	Joe Thorley <joe at poissonconsulting.ca>
License:	GPL-2
URL:	https://github.com/joethorley/datalist
NeedsCompilation:	no
Citation:	datalist citation info
Materials:	README NEWS
CRAN checks:	datalist results

Downloads:

Reference manual:	datalist.pdf
Package source:	datalist_0.2.tar.gz
Windows binaries:	r-devel: datalist_0.2.zip, r-release: datalist_0.2.zip, r-oldrel: datalist_0.2.zip
OS X Snow Leopard binaries:	r-release: datalist_0.2.tgz, r-oldrel: datalist_0.2.tgz
OS X Mavericks binaries:	r-release: datalist_0.2.tgz

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关键词：winbugs package WINBUG BUGS Pack

glmmBUGS: Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS

Write bugs model files for hierarchical and spatial models, arranges unbalanced data in ragged arrays, and creates starting values.

Version:	2.3
Depends:	R (≥ 3.0.0)
Imports:	MASS, abind
Suggests:	spdep
Enhances:	R2WinBUGS, R2OpenBUGS, BRugs, R2jags, sp, nlme
Published:	2014-01-02
Author:	Patrick Brown
Maintainer:	Patrick Brown <patrick.brown at utoronto.ca>
License:	GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation:	no
In views:	Bayesian, Spatial
CRAN checks:	glmmBUGS results

Downloads:

Reference manual:	glmmBUGS.pdf
Package source:	glmmBUGS_2.3.tar.gz
Windows binaries:	r-devel: glmmBUGS_2.3.zip, r-release: glmmBUGS_2.3.zip, r-oldrel: glmmBUGS_2.3.zip
OS X Snow Leopard binaries:	r-release: glmmBUGS_2.3.tgz, r-oldrel: glmmBUGS_2.3.tgz
OS X Mavericks binaries:	r-release: glmmBUGS_2.3.tgz
Old sources:	glmmBUGS archive

iBUGS: An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets

This package has provided an interface to WinBUGS/OpenBUGS/JAGS via R2WinBUGS and R2jags. Some options will be intelligently guessed, e.g. the path to WinBUGS/OpenBUGS/JAGS and the data/parameter list. Users can specify all the options in a GUI.

Version:	0.1.4
Depends:	R2WinBUGS, gWidgetsRGtk2
Suggests:	R2jags, knitr
Published:	2013-12-10
Author:	Yihui Xie and Jiebiao Wang
Maintainer:	Jiebiao Wang <randel.wang at gmail.com>
License:	GPL-2 | GPL-3
NeedsCompilation:	no
CRAN checks:	iBUGS results

Downloads:

Reference manual:	iBUGS.pdf
Vignettes:	An Introduction to iBUGS
Package source:	iBUGS_0.1.4.tar.gz
Windows binaries:	r-devel: iBUGS_0.1.4.zip, r-release: iBUGS_0.1.4.zip, r-oldrel: iBUGS_0.1.4.zip
OS X Snow Leopard binaries:	r-release: iBUGS_0.1.4.tgz, r-oldrel: iBUGS_0.1.4.tgz
OS X Mavericks binaries:	r-release: not available
Old sources:	iBUGS archive

R2WinBUGS: Running WinBUGS and OpenBUGS from R / S-PLUS

Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R / S-PLUS. In S-PLUS, the openbugs functionality and the windows emulation functionality is not yet available.

Version:	2.1-19
Depends:	R (≥ 2.13.0), coda (≥ 0.11-0), boot
Suggests:	BRugs (≥ 0.3-2)
Published:	2013-04-07
Author:	originally written by Andrew Gelman; changes and packaged by Sibylle Sturtz and Uwe Ligges. With considerable contributions by Gregor Gorjanc and Jouni Kerman. Ported to S-PLUS by Insightful Corp.
Maintainer:	Uwe Ligges <ligges at statistik.tu-dortmund.de>
License:	GPL-2
URL:	http://www.stat.columbia.edu/~gelman/bugsR/
NeedsCompilation:	no
SystemRequirements:	WinBUGS 1.4
Citation:	R2WinBUGS citation info
Materials:	NEWS
In views:	Bayesian, gR
CRAN checks:	R2WinBUGS results

Downloads:

Reference manual:	R2WinBUGS.pdf
Package source:	R2WinBUGS_2.1-19.tar.gz
Windows binaries:	r-devel: R2WinBUGS_2.1-19.zip, r-release: R2WinBUGS_2.1-19.zip, r-oldrel: R2WinBUGS_2.1-19.zip
OS X Snow Leopard binaries:	r-release: R2WinBUGS_2.1-19.tgz, r-oldrel: R2WinBUGS_2.1-19.tgz
OS X Mavericks binaries:	r-release: R2WinBUGS_2.1-19.tgz
Old sources:	R2WinBUGS archive

Reverse dependencies:

Reverse depends:	bisoreg, iBUGS
Reverse imports:	mi, R2jags, spikeSlabGAM
Reverse suggests:	AICcmodavg, arm, bcrm, classify, dclone, emdbook, gemtc, mcmcplots, MethComp, mixstock
Reverse enhances:	glmmBUGS

BRugs: R interface to the OpenBUGS MCMC software

Fully-interactive R interface to the OpenBUGS software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on Linux and on 64-bit R under Windows are in "beta" status and less efficient.

Version:	0.8-3
Depends:	R (≥ 2.11.0)
Imports:	utils, coda
Published:	2013-08-19
Author:	OpenBUGS was developed by Andrew Thomas, Dave Lunn, David Spiegelhalter and Nicky Best. R interface developed by Uwe Ligges, Sibylle Sturtz, Andrew Gelman, Gregor Gorjanc and Chris Jackson. Linux port and most recent developments by Chris Jackson.
Maintainer:	Uwe Ligges <ligges at statistik.tu-dortmund.de>
License:	GPL-2
URL:	http://www.openbugs.info/
NeedsCompilation:	yes
SystemRequirements:	OpenBUGS (>= 3.2.2), hence Windows or Linux
Citation:	BRugs citation info
Materials:	NEWS
In views:	gR
CRAN checks:	BRugs results

Downloads:

Reference manual:	BRugs.pdf
Package source:	BRugs_0.8-3.tar.gz
Windows binaries:	r-devel: BRugs_0.8-3.zip, r-release: BRugs_0.8-3.zip, r-oldrel: BRugs_0.8-3.zip
OS X Snow Leopard binaries:	r-release: not available, r-oldrel: not available
OS X Mavericks binaries:	r-release: not available
Old sources:	BRugs archive

Reverse dependencies:

Reverse suggests:	bcrm, dclone, gemtc, MethComp, R2WinBUGS
Reverse enhances:	glmmBUGS

R2OpenBUGS: Running OpenBUGS from R

Using this package, it is possible to call a BUGS model, summarize inferences and convergence in a table and graph, and save the simulations in arrays for easy access in R.

Version:	3.2-2.2
Depends:	R (≥ 2.13.0)
Imports:	coda (≥ 0.11-0), boot
Published:	2013-04-10
Author:	originally written as R2WinBUGS by Andrew Gelman; changes and packaged by Sibylle Sturtz and Uwe Ligges. With considerable contributions by Gregor Gorjanc and Jouni Kerman. Adapted to R2OpenBUGS from R2WinBUGS by Neal Thomas.
Maintainer:	Neal Thomas <snthomas99 at yahoo.com>
License:	GPL-2
NeedsCompilation:	no
SystemRequirements:	OpenBUGS (>= 3.2.2)
Citation:	R2OpenBUGS citation info
Materials:	NEWS
In views:	gR
CRAN checks:	R2OpenBUGS results

Downloads:

Reference manual:	R2OpenBUGS.pdf
Vignettes:	R2OpenBUGS
Package source:	R2OpenBUGS_3.2-2.2.tar.gz
Windows binaries:	r-devel: R2OpenBUGS_3.2-2.2.zip, r-release: R2OpenBUGS_3.2-2.2.zip, r-oldrel: R2OpenBUGS_3.2-2.2.zip
OS X Snow Leopard binaries:	r-release: R2OpenBUGS_3.2-2.2.tgz, r-oldrel: not available
OS X Mavericks binaries:	r-release: R2OpenBUGS_3.2-2.2.tgz
Old sources:	R2OpenBUGS archive

Reverse dependencies:

Reverse suggests:	AICcmodavg, dclone, tsbugs
Reverse enhances:	glmmBUGS

rbugs: Fusing R and OpenBugs and Beyond

Functions to prepare files needed for running BUGS in batch-mode, and running BUGS from R. Support for Linux and Windows systems with OpenBugs is emphasized.

Version:	0.5-9
Suggests:	coda (≥ 0.13-5)
Published:	2013-04-09
Author:	Jun Yan and Marcos Prates
Maintainer:	Marcos Prates <marcosop at est.ufmg.br>
License:	GPL (≥ 3.0)
NeedsCompilation:	no
Materials:	ChangeLog
In views:	Bayesian, gR
CRAN checks:	rbugs results

Downloads:

Reference manual:	rbugs.pdf
Package source:	rbugs_0.5-9.tar.gz
Windows binaries:	r-devel: rbugs_0.5-9.zip, r-release: rbugs_0.5-9.zip, r-oldrel: rbugs_0.5-9.zip
OS X Snow Leopard binaries:	r-release: rbugs_0.5-9.tgz, r-oldrel: rbugs_0.5-9.tgz
OS X Mavericks binaries:	r-release: rbugs_0.5-9.tgz
Old sources:	rbugs archive

Reverse dependencies:

Reverse depends:

R2MLwiN

runjags: Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS

This package provides high-level interface utilities for Just Another Gibbs Sampler (JAGS). The primary functions facilitate running parallel JAGS models for multiple chains, automated control of convergence and sample length diagnostics, evaluation of the performance of a model against simulated data, and compatibility with the WinBUGS syntax of model files with data and initial values lists. Model fitting can be done locally (via the rjags package or separate JAGS instances) or via distributed computing clusters such as those provided by snow (a Simple Network Of Workstations), Xgrid, or other user specified functions. A JAGS extension module implementing additional distributions for JAGS models (including the Pareto family of distributions) is also provided.

Version:	1.2.1-0
Depends:	R (≥ 2.14)
Imports:	parallel, lattice (≥ 0.20-10), coda (≥ 0.16-1), stats, utils
Suggests:	rjags
Published:	2014-06-21
Author:	Matthew Denwood
Maintainer:	Matthew Denwood <md at sund.ku.dk>
License:	GPL-2
Copyright:	The code in src/distributions/jags/ (and elements elsewhere where indicated) is Copyright (C) 2002-10 Martyn Plummer, licensed under GPL-2. All other code is Copyright (C) Matthew Denwood, licensed under GPL-2.
URL:	http://cran.r-project.org/web/packages/runjags/
NeedsCompilation:	yes
SystemRequirements:	jags (see http://mcmc-jags.sourceforge.net)
Citation:	runjags citation info
Materials:	README ChangeLog
In views:	Bayesian
CRAN checks:	runjags results

Downloads:

Reference manual:	runjags.pdf
Vignettes:	Using the runjags package
Package source:	runjags_1.2.1-0.tar.gz
Windows binaries:	r-devel: runjags_1.2.1-0.zip, r-release: runjags_1.2.1-0.zip, r-oldrel: runjags_1.2.1-0.zip
OS X Snow Leopard binaries:	r-release: runjags_1.2.1-0.tgz, r-oldrel: runjags_1.2.1-0.tgz
OS X Mavericks binaries:	r-release: runjags_1.2.1-0.tgz
Old sources:	runjags archive

Reverse dependencies:

Reverse depends:	BANOVA, bayescount, IsotopeR, pcnetmeta
Reverse suggests:	surveillance

R2jags: A Package for Running jags from R

Using this package to call jags from R.

Version:	0.04-03
Depends:	R (≥ 2.14.0), rjags (≥ 3-3)
Imports:	abind, coda (≥ 0.13), methods, R2WinBUGS, parallel
Published:	2014-06-19
Author:	Yu-Sung Su, Masanao Yajima,
Maintainer:	Yu-Sung Su <suyusung at tsinghua.edu.cn>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	no
SystemRequirements:	jags (>= 3.3.0)
Materials:	ChangeLog
In views:	Bayesian
CRAN checks:	R2jags results

Downloads:

Reference manual:	R2jags.pdf
Package source:	R2jags_0.04-03.tar.gz
Windows binaries:	r-devel: R2jags_0.04-03.zip, r-release: R2jags_0.04-03.zip, r-oldrel: R2jags_0.04-03.zip
OS X Snow Leopard binaries:	r-release: R2jags_0.04-03.tgz, r-oldrel: R2jags_0.04-03.tgz
OS X Mavericks binaries:	r-release: not available
Old sources:	R2jags archive

Reverse dependencies:

Reverse depends:	BayesMed, CCTpack, IUPS, pcnetmeta
Reverse imports:	agRee, classify
Reverse suggests:	AICcmodavg, BCEA, BCEs0, iBUGS, mixstock
Reverse enhances:	glmmBUGS

bayesmix: Bayesian Mixture Models with JAGS

Bayesian mixture models of univariate Gaussian distributions using JAGS

Version:	0.7-3
Depends:	R (≥ 2.10)
Imports:	rjags (≥ 2.1.0), coda (≥ 0.13)
Published:	2014-03-11
Author:	Bettina Gruen [aut, cre], Martyn Plummer [ctb]
Maintainer:	Bettina Gruen <Bettina.Gruen at jku.at>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	http://ifas.jku.at/gruen/BayesMix
NeedsCompilation:	no
Materials:	NEWS
In views:	Bayesian, Cluster, gR
CRAN checks:	bayesmix results

Downloads:

Reference manual:	bayesmix.pdf
Package source:	bayesmix_0.7-3.tar.gz
Windows binaries:	r-devel: bayesmix_0.7-3.zip, r-release: bayesmix_0.7-3.zip, r-oldrel: bayesmix_0.7-3.zip
OS X Snow Leopard binaries:	r-release: bayesmix_0.7-3.tgz, r-oldrel: bayesmix_0.7-3.tgz
OS X Mavericks binaries:	r-release: not available
Old sources:	bayesmix archive