【latex版】水贴

How to Learn R

There are tons of resources to help you learn the different aspects of R, and as a beginner this can be overwhelming. It’s also a dynamic language and rapidly changing, so it’s important to keep up with the latest tools and technologies.

That’s why R-bloggers and DataCamp have worked together to bring you a learning path for R. Each section points you to relevant resources and tools to get you started and keep you engaged to continue learning. It’s a mix of materials ranging from documentation, online courses, books, and more.

Just like R, this learning path is a dynamic resource. We want to continually evolve and improve the resources to provide the best possible learning experience. So if you have suggestions for improvement please email tal.galili@gmail.com with your feedback.

Learning Path

Getting started:  The basics of R

Setting up your machine

R packages

Importing your data into R

Data Manipulation

Data Visualization

Data Science & Machine Learning with R

Reporting Results in R

Next steps

Getting started:  The basics of R

The best way to learn R is by doing. In case you are just getting started with R, this free introduction to R tutorial by DataCamp is a great resource as well the successorIntermediate R programming (subscription required). Both courses teach you R programming and data science interactively, at your own pace, in the comfort of your browser. You get immediate feedback during exercises with helpful hints along the way so you don’t get stuck.

Another free online interactive learning tutorial for R is available by O’reilly’s code school website called try R. An offline interactive learning resource is swirl, an R package that makes if fun and easy to become an R programmer. You can take a swirl course by (i)installing the package in R, and (ii) selecting a course from the course library. If you want to start right away without needing to install anything you can also choose for the online version of Swirl.

There are also some very good MOOC’s available on edX and Coursera that teach you the basics of R programming. On edX you can find Introduction to R Programming by Microsoft, an 8 hour course that focuses on the fundamentals and basic syntax of R. At Coursera there is the very popular R Programming course by Johns Hopkins. Both are highly recommended!

If you instead prefer to learn R via a written tutorial or book there is plenty of choice. There is the introduction to R manual by CRAN, as well as some very accessible books like Jared Lander’s R for Everyone or R in Action by Robert Kabacoff.

Setting up your machine

You can download a copy of R from the Comprehensive R Archive Network (CRAN). There are binaries available for Linux, Mac and Windows.

Once R is installed you can choose to either work with the basic R console, or with an integrated development environment (IDE).RStudio is by far the most popular IDE for R and supports debugging, workspace management, plotting and much more (make sure to check out the RStudio shortcuts).

Next to RStudio you also have Architect, and Eclipse-based IDE for R. If you prefer to work with a graphical user interface you can have a look at R-commander  (aka as Rcmdr), or Deducer.

R packages

R packages are the fuel that drive the growth and popularity of R. R packages are bundles of code, data, documentation, and tests that are easy to share with others. Before you can use a package, you will first have to install it. Some packages, like the base package, are automatically installed when you install R. Other packages, like for example the ggplot2 package, won’t come with the bundled R installation but need to be installed.

Many (but not all) R packages are organized and available fromCRAN, a network of servers around the world that store identical, up-to-date, versions of code and documentation for R. You can easily install these package from inside R, using the install.packages function. CRAN also maintains a set ofTask Views that identify all the packages associated with a particular task such as for exampleTimeSeries.

Next to CRAN you also have bioconductor which has packages for the analysis of high-throughput genomic data, as well as for example the github and bitbucket repositories of R package developers. You can easily install packages from these repositories using the devtools package.

Finding a package can be hard, but luckily you can easily search packages from CRAN, github and bioconductor usingRdocumentation, inside-R, or you can have a look at this quick list of useful R packages.

To end, once you start working with R, you’ll quickly find out that R package dependencies can cause a lot of headaches. Once you get confronted with that issue, make sure to check out packrat (seevideo tutorial) or checkpoint. When you’d need to update R, if you are using Windows, you can use the updateR() function from theinstallr package.

Importing your data into R

The data you want to import into R can come in all sorts for formats: flat files, statistical software files, databases and web data.

Getting different types of data into R often requires a different approach to use. To learn more in general on how to get different data types into R you can check out this online Importing Data into R tutorial (subscription required), this post on data importing, orthis webinarby RStudio.

• Flat files are typically simple text files that contain table data. The standard distribution of R provides functionality to import these flat files into R as a data frame with functions such as read.table() and read.csv() from the utils package. Specific R packages to import flat files data are readr, a fast and very easy to use package that is less verbose as utils and multiple times faster (more information), and data.table’sfread() function for importing and munging data into R (using the fread function).
  

• In case you want to get your excel files into R, it’s a good idea to have a look at thereadxl package. Alternatively, there is thegdata package which has function that supports the import of Excel data, and the XLConnectpackage. The latter acts as a real bridge between Excel and R meaning you can do any action you could do within Excel but you do it from inside R. Read more on importing your excel files into R.
  

• Software packages such as SAS, STATA and SPSS use and produce their own file types. The haven package by Hadley Wickham can deal with importing SAS, STATA and SPSS data files into R and is very easy to use. Alternatively there is theforeign package, which is able to import not only SAS, STATA and SPSS files but also more exotic formats like Systat and Weka for example. It’s also able to export data again to various formats. (Tip: if you’re switching from SAS,SPSS or STATA to R, check out Bob Muenchen’s tutorial (subscription required))
  

• The packages used to connect to and import from a relational database depend on the type of database you want to connect to. Suppose you want to connect to a MySQL database, you will need the RMySQL package. Others are for example theRpostgreSQL and ROracle package.The R functions you can then use to access and manipulate the database, is specified in another R package called DBI.
  

• If you want to harvest web data using R you need to connect R to resources online using API’s or through scraping with packages like rvest. To get started with all of this, there is this great resource freely available on the blog of Rolf Fredheim.
  

谢谢楼主！

分享的东西不错

顶起来！

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384084/

每日一球