摘要翻译:
在所谓的遗传密码晶体基模型框架下,提出了用一串$2n$整数来描述$n$核苷酸的DNA或RNA序列的数学算法。该描述允许在两个序列之间定义不平凡的距离,并对序列执行离散傅立叶变换。利用距离的定义,对人、鸡和负鼠的β-珠蛋白序列进行了比较。对一些简单的例子进行了离散傅里叶变换的计算。
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英文标题:
《Metrics and Harmonic Analysis on DNA》
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作者:
A. Sciarrino
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最新提交年份:
2017
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分类信息:
一级分类:Quantitative Biology 数量生物学
二级分类:Other Quantitative Biology 其他定量生物学
分类描述:Work in quantitative biology that does not fit into the other q-bio classifications
不适合其他q-bio分类的定量生物学工作
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一级分类:Physics 物理学
二级分类:Soft Condensed Matter 软凝聚态物质
分类描述:Membranes, polymers, liquid crystals, glasses, colloids, granular matter
膜,聚合物,液晶,玻璃,胶体,颗粒物质
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一级分类:Physics 物理学
二级分类:Biological Physics 生物物理学
分类描述:Molecular biophysics, cellular biophysics, neurological biophysics, membrane biophysics, single-molecule biophysics, ecological biophysics, quantum phenomena in biological systems (quantum biophysics), theoretical biophysics, molecular dynamics/modeling and simulation, game theory, biomechanics, bioinformatics, microorganisms, virology, evolution, biophysical methods.
分子生物物理、细胞生物物理、神经生物物理、膜生物物理、单分子生物物理、生态生物物理、生物系统中的量子现象(量子生物物理)、理论生物物理、分子动力学/建模与模拟、博弈论、生物力学、生物信息学、微生物、病毒学、进化论、生物物理方法。
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英文摘要:
A mathematical algorithm to describe DNA or RNA sequences of $N$ nucleotides by a string of $2N$ integers numbers is presented in the framework of the so called crystal basis model of the genetic code. The description allows to define a not trivial distance between two sequences and to perform the Discrete Fourier Transform on a sequence. Using the definition of distance the sequence of $\beta$-globin for Homo, Gallus and Opossum are compared. The Discrete Fourier Transform for some simple examples is computed.
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PDF链接:
https://arxiv.org/pdf/1703.00445